Recent Submissions

  • Cation‐π Interactions between Methylated Ammonium Groups and Tryptophan in the CHARMM36 Additive Force Field 

    Khan, Hanif Muhammad; MacKerell, Alexander D.; Reuter, Nathalie (American Chemical Society, 2019)
    Cation-π interactions between tryptophan and choline or trimethylated lysines are vital for many biological processes. The performance of the additive CHARMM36 force field against target quantum mechanical data is shown ...
    Journal article
  • The flickering connectivity system of the north Andean páramos 

    Flantua, Suzette; O'Dea, Aaron; Onstein, Renske E; Giraldo, Catalina; Hooghiemstra, Henry (Wiley, 2019-06-13)
    Aim: To quantify the effect of Pleistocene climate fluctuations on habitat connectivity across páramos in the Northern Andes. Location: Northern Andes. Methods: The unique páramos habitat underwent dynamic shifts ...
    Journal article
  • Metabolic disorders: role of pregnane X receptor, fibroblast growth factor 19 and persistent organic pollutants 

    Castelli, Martina Galatea (The University of Bergen, 2020-06-08)
    The incidence of obesity and correlated metabolic abnormalities has increased dramatically in the last decades and constitutes a huge burden on healthcare systems and economies. It is therefore important to increase our ...
    Doctoral thesis
  • The handbook for standardized field and laboratory measurements in terrestrial climate change experiments and observational studies (ClimEx) 

    Halbritter Rechsteiner, Aud Helen; De Boeck, Hans J.; Eycott, Amy Elizabeth; Reinsch, Sabine; Robinson, David A.; Vicca, Sara; Berauer, Bernd; Christiansen, Casper Tai; Estiarte, Marc; Grünzweig, José M.; Gya, Ragnhild; Hansen, Karin; Jentsch, Anke; Lee, Hanna; Linder, Sune; Marshall, John; Peñuelas, Josep; Schmidt, Inger Kappel; Stuart-Haëntjens, Ellen; Wilfahrt, Peter; Vandvik, Vigdis; Abrantes, Nelson; Almagro, María; Althuizen, Inge; Barrio, Isabel C.; te Beest, Mariska; Beier, Claus; Beil, Iilka; Berry, Z. Carter; Birkemoe, Tone; Bjerke, Jarle W.; Blonder, Benjamin; Blume-Werry, Gesche; Bohrer, Gil; Campos, Isabel; Cernusak, Lucas S.; Chojnicki, Bogdan H.; Cosby, Bernhard J.; Dickman, Lee T.; Djukic, Ika; Filella, Iolanda; Fuchslueger, Lucia; Gargallo-Garriga, Albert; Gillespie, Mark Andrew; Goldsmith, Gregory R.; Gough, Christopher; Halliday, Fletcher W.; Hegland, Stein Joar; Hoch, Gunter; Holub, Petr; Jaroszynska, Francesca Orinda Holl; Johnson, Daniel M.; Jones, Scott B.; Kardol, Paul; Keizer, Jan J.; Klem, Karel; Konestabo, Heidi Sjursen; Kreyling, Jürgen; Kröel-Dulay, György; Landhäusser, Simon M.; Larsen, Klaus S.; Leblans, Niki; Lebron, Inma; Lehmann, Marco M.; Lembrechts, Jonas J.; Lenz, Armando; Linstädter, Anja; Llusià, Joan; Macias-Fauria, Marc; Malyshev, Andrey V.; Mänd, Pille; Marshall, Miles; Matheny, Ashley M.; McDowell, Nate; Meier, Ina C.; Meinzer, Frederick C.; Michaletz, Sean T.; Miller, Megan L.; Muffler, Lena; Oravec, Michal; Ostonen, Ivika; Porcar-Castell, Albert; Preece, Catherine; Prentice, Iain C.; Radujković, Dajana; Ravolainen, Virve; Ribbons, Relena; Ruppert, Jan C.; Sack, Lawren; Sardans, Jordi; Schindlbacher, Andreas; Scoffoni, Christine; Sigurdsson, Bjarni D.; Smart, Simon M; Smith, Stuart; Soper, Fiona; Speed, James David Mervyn; Sverdrup-Thygeson, Anne; Sydenham, Markus A. K.; Taghizadeh-Toosi, Arezoo; Telford, Richard J.; Tielborger, Katja; Töpper, Joachim Paul; Urban, Otmar; van der Ploeg, Martine; Van Langenhove, Leandro; Večeřová, Kristýna; Ven, Arne; Verbruggen, Erik; Vik, Unni; Weigel, Robert; Wohlgemuth, Thomas; Wood, Lauren K.; Zinnert, Julie; Zurba, Kamal (Wiley, 2019-11-05)
    1. Climate change is a world‐wide threat to biodiversity and ecosystem structure, functioning and services. To understand the underlying drivers and mechanisms, and to predict the consequences for nature and people, we ...
    Journal article
  • Position and orientation of the westerly jet determined Holocene rainfall patterns in China 

    Herzschuh, Ulrike; Cao, Xianyong; Laepple, Thomas; Dallmeyer, Anne; Telford, Richard; Ni, Jian; Chen, Fahu; Kong, Zhaochen; Liu, Guangxui; Liu, Kam-Bui; Liu, Xingqi; Stebich, Martina; Tang, Lingyu; Tian, Fang; Wang, Yongbo; Wischnewski, Juliane; Xu, Qinghai; Yan, Shun; Yang, Zhenjing; Yu, Ge; Zhang, Yun; Zhao, Yan; Zheng, Zhuo (Nature Research, 2019-05-30)
    Proxy-based reconstructions and modeling of Holocene spatiotemporal precipitation patterns for China and Mongolia have hitherto yielded contradictory results indicating that the basic mechanisms behind the East Asian Summer ...
    Journal article
  • Ammonia-eliminating potential of Gracilaria sp. And zeolite: a preliminary study of the efficient ammonia eliminator in aquatic environment 

    Royan, Muhammad Rahmad; Solim, MH; Santanumurti, Muhammad Browijoyo (IOP Publishing, 2019-02-01)
    High density and high feeding volume are regarded as factors causing huge accumulations of Total Ammonia Nitrogen (TAN) in an aquaculture system. An uncontrolled TAN concentration in an aquaculture system can pose a threat ...
    Journal article
  • Physiological response of temperature shocks in turbot and sole 

    Foss, Atle; Imsland, Albert; van de Vis, Hans; Abbink, Wout; Lambooij, Bert; Roth, Bjørn (Taylor & Francis, 2019)
    In the present study, selected temperature drops were examined to investigate the effects of live chilling on stress and welfare in turbot and sole. This study demonstrated that rapid temperature drops from 11°C–12°C and ...
    Journal article
  • The influence of vgll3 genotypes on sea age at maturity is altered in farmed mowi strain Atlantic salmon 

    Ayllon, Fernando; Solberg, Monica Favnebøe; Glover, Kevin; Mohammadi, Faezeh; Kjærner-Semb, Erik Nordtorp; Fjelldal, Per Gunnar; Andersson, Eva; Hansen, Tom Johnny; Edvardsen, Rolf; Wargelius, Anna (BioMed Central (BMC), 2019-05-06)
    Background: In Atlantic salmon in the wild, age at maturity is strongly influenced by the vgll3 locus. Under farming conditions, light, temperature and feeding regimes are known significantly advance or delay age at ...
    Journal article
  • The peptide transporter 1a of the zebrafish Danio rerio, an emerging model in nutrigenomics and nutrition research: Molecular characterization, functional properties, and expression analysis 

    Vacca, Francesca; Barca, Amilcare; Gomes, Ana S.; Mazzei, Aurora; Piccinni, Barbara; Cinquetti, Raffaella; Del Vecchio, Gianmarco; Romano, Alessandro; Rønnestad, Ivar; Bossi, Elena; Verri, Tiziano (BioMed Central (BMC), 2019-12-19)
    Background: Peptide transporter 1 (PepT1, alias Slc15a1) mediates the uptake of dietary di/tripeptides in all vertebrates. However, in teleost fish, more than one PepT1-type transporter might function, due to specific ...
    Journal article
  • The protective effect of the Phe362Tyr mutation in salmon lice’ (Lepeophtheirus salmonis) AChE when exposed to full-scale azamethiphos bath treatments 

    Helgesen, Kari Marie Olli; Røyset, Kristoffer Alnes; Aspehaug, Vidar; Jansen, Peder A (Elsevier, 2019-04-30)
    Organophosphates are applied for medicinal bath treatments of salmon lice (Lepeophtheirus salmonis) infested farmed salmonids. This chemical class remains important despite the development of resistant parasites, due to ...
    Journal article
  • Smaller classes promote equitable student participation in STEM 

    Ballen, Cissy J.; Aguillon, Stepfanie M.; Awwad, Azza; Bjune, Anne Elisabeth; Challou, Daniel; Drake, Abby Grace; Driessen, Michelle; Ellozy, Aziza; Ferry, Vivian E.; Goldberg, Emma E.; Harcombe, William; Jensen, Steve; Jørgensen, Christian; Koth, Zoe; McGaugh, Suzanne; Mitry, Caroline; Mosher, Bryan; Mostafa, Hoda; Petipas, Renee H.; Soneral, Paula A.G.; Watters, Shana; Wassenberg, Deena; Weiss, Stacey L.; Yonas, Azariah; Zamudio, Kelly R.; Cotner, Sehoya Harris (Oxford University Press, 2019)
    As science, technology, engineering, and mathematics (STEM) classrooms in higher education transition from lecturing to active learning, the frequency of student interactions in class increases. Previous research documents ...
    Journal article
  • Strategies Used Throughout the World to Manage Fisheries Discards – Lessons for Implementation of the EU Landing Obligation 

    Karp, William A; Breen, Michael; Borges, Lisa; Fitzpatrick, Mike; Kennelly, Steven J.; Kolding, Jeppe; Nielsen, Kåre Nolde; Vidarsson, Jonas R.; Cocas, Luis; Leadbitter, Duncan (Springer, 2019)
    In many countries, policies regarding reduction of unwanted catch and discards are crafted in response to concerns regarding accountability, conservation, and waste as well as scientific needs to fully account for all ...
    Chapter
  • Seasonal and diel variation in greenhouse gas emissions from an urbanpond and its major drivers 

    van Bergen, Tamara J.H.M.; Barros, Nathan; Mendonça, Raquel; Aben, Ralf C.H.; Althuizen, Inge; Huszar, Vera; Lamers, Leon P.M.; Lürling, Miquel; Roland, Fábio; Kosten, Sarian (Wiley Periodicals, Inc, 2019-09)
    Small water systems are important hotspots of greenhouse gas (GHG) emission, but estimates are poorly constrained as data are scarce. Small ponds are often constructed in urban areas, where they receive large amounts of ...
    Journal article
  • SIX3 and SIX6 interact with GEMININ via C-terminal regions 

    Turcu, Diana Cornelia; Lillehaug, Johan R.; Seo, Hee-Chan (Elsevier, 2019-12)
    The histoarchitecture and function of eye and forebrain depend on a well-controlled balance between cell proliferation and differentiation. For example, the binding of the cell cycle regulator GEMININ to CDT1, which is a ...
    Journal article
  • A test of migratory coupling in the salmon-trout predator-prey complex of a subarctic fjord 

    Lennox, Robert J.; Espedal, Espen Olsen; Barlaup, Bjørn Torgeir; Mahlum, Shad Kenneth; Vollset, Knut (Boreal Environment Research Publishing Board, 2019)
    Atlantic salmon (Salmo salar) smolts are vulnerable to predators during their seaward migration. To determine whether sea trout (Salmo trutta) exhibit a coupled migration to exploit the smolt run, we tracked Atlantic ...
    Journal article
  • Switching of INCENP paralogs controls transitions in mitotic chromosomal passenger complex functions 

    Feng, Haiyang; Raasholm, Martina; Moosmann-Schulmeister, Alexand; Campsteijn, Coen; Thompson, Eric (Taylor & Francis, 2019)
    A single inner centromere protein (INCENP) found throughout eukaryotes modulates Aurora B kinase activity and chromosomal passenger complex (CPC) localization, which is essential for timely mitotic progression. It has been ...
    Journal article
  • From the fjords to the rivers: Evaluating the spatial distribution of escaped farmed salmon to inform ecologically relevant management strategies 

    Mahlum, Shad Kenneth (The University of Bergen, 2020-05-08)
    Over the last 40 years, the relatively fast expansion of Atlantic salmon aquaculture has created new obstacles for the persistence of wild Atlantic salmon stocks where the two overlap. Now, the greatest threat to existing ...
    Doctoral thesis
  • A multi-dating approach to age-modelling long continental records: The 135 ka El Cañizar de Villarquemado sequence (NE Spain) 

    Valero-Garcés, Blas L.; González-Sampériz, Penélope; Gil-Romera, Graciela; Benito De Pando, Blas Manuel; Moreno, Ana; Oliva-Urcia, Belén; Aranbarri, Josu; García-Prieto, Eduardo; Frugone, Matías; Morellón, Mario; Arnold, Lee J.; Demuro, Martina; Hardiman, Mark J.; Blockley, Simon P.E.; Lane, Christine S. (Elsevier, 2019)
    We present a multidisciplinary dating approach - including radiocarbon, Uranium/Thorium series (U/Th), paleomagnetism, single-grain optically stimulated luminescence (OSL), polymineral fine-grain infrared stimulated ...
    Journal article
  • A teleost structural analogue to the avian bursa of Fabricius 

    Løken, Oskar Mongstad; Bjørgen, Håvard; Hordvik, Ivar; Koppang, Erling Olaf (John Wiley & Sons Ltd., 2019-12-26)
    The bursa of Fabricius is a primary and secondary lymphoid organ considered exclusively present in birds, and studies of this structure have been vital to our current understanding of the adaptive immune system of vertebrates. ...
    Journal article
  • Swimming with the fishes: validating drift diving to identify farmed Atlantic salmon escapees in the wild 

    Mahlum, Shad Kenneth; Skoglund, Helge; Wiers, Tore; Norman, Eirik; Barlaup, Bjørn Torgeir; Wennevik, Vidar; Glover, Kevin; Urdal, Kurt; Bakke, Gunnar O; Vollset, Knut (Inter-Research, 2019)
    Escaped farmed Atlantic salmon Salmo salar interbreeding with wild conspecifics represents a threat to the genetic integrity and viability of wild populations. Therefore, it is necessary to accurately quantify escapees in ...
    Journal article

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